One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2019/07/07/compare-matrices_2019-07-07.131158_1jcpyT/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2019/07/07/compare-matrices_2019-07-07.131158_1jcpyT/compare-matrices.tab

One-to-n matrix alignment; reference matrix: dyads_test_vs_ctrl_m1_shift8 ; 14 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
dyads_test_vs_ctrl_m1_shift8 (dyads_test_vs_ctrl_m1)														; dyads_test_vs_ctrl_m1; m=0 (reference); ncol1=13; shift=8; ncol=21; --------wwtgGCGGGAAaw ; Alignment reference a 0 0 0 0 0 0 0 0 34 29 11 12 3 7 1 2 4 78 74 31 33 c 0 0 0 0 0 0 0 0 20 15 9 14 0 80 2 6 4 7 4 22 19 g 0 0 0 0 0 0 0 0 12 17 17 52 88 1 88 84 83 4 11 23 17 t 0 0 0 0 0 0 0 0 27 32 56 15 2 5 2 1 2 4 4 17 24
E2Fc_E2Fc_Athamap_rc_shift8 (E2Fc:E2Fc:Athamap_rc)		0.948	0.802	0.814	0.952	0.975	3	1	9	1	1	3.000	1	; dyads_test_vs_ctrl_m1 versus E2Fc_E2Fc_Athamap_rc (E2Fc:E2Fc:Athamap_rc); m=1/13; ncol2=11; w=11; offset=0; strand=R; shift=8; score= 3; --------wwkgGCGGGAA-- ; cor=0.948; Ncor=0.802; logoDP=0.814; NsEucl=0.952; NSW=0.975; rcor=3; rNcor=1; rlogoDP=9; rNsEucl=1; rNSW=1; rank_mean=3.000; match_rank=1 a 0 0 0 0 0 0 0 0 2 2 0 1 0 0 0 0 0 4 4 0 0 c 0 0 0 0 0 0 0 0 0 0 0 1 0 5 0 1 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 2 3 5 0 5 4 5 0 0 0 0 t 0 0 0 0 0 0 0 0 3 3 3 0 0 0 0 0 0 1 1 0 0
E2Fa_E2Fa_Athamap_rc_shift12 (E2Fa:E2Fa:Athamap_rc)		0.973	0.599	0.462	0.943	0.974	1	4	11	2	2	4.000	2	; dyads_test_vs_ctrl_m1 versus E2Fa_E2Fa_Athamap_rc (E2Fa:E2Fa:Athamap_rc); m=2/13; ncol2=8; w=8; offset=4; strand=R; shift=12; score= 4; ------------GCGGGAAw- ; cor=0.973; Ncor=0.599; logoDP=0.462; NsEucl=0.943; NSW=0.974; rcor=1; rNcor=4; rlogoDP=11; rNsEucl=2; rNSW=2; rank_mean=4.000; match_rank=2 a 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 2 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 3 0 3 3 3 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
DEL2.ampDAP_M0366_AthalianaCistrome_shift6 (DEL2.ampDAP:M0366:AthalianaCistrome)		0.874	0.757	8.210	0.915	0.906	6	2	1	7	9	5.000	5	; dyads_test_vs_ctrl_m1 versus DEL2.ampDAP_M0366_AthalianaCistrome (DEL2.ampDAP:M0366:AthalianaCistrome); m=5/13; ncol2=15; w=13; offset=-2; strand=D; shift=6; score= 5; ------tTTTTGGCGGGAAAA ; cor=0.874; Ncor=0.757; logoDP=8.210; NsEucl=0.915; NSW=0.906; rcor=6; rNcor=2; rlogoDP=1; rNsEucl=7; rNSW=9; rank_mean=5.000; match_rank=5 a 0 0 0 0 0 0 114 57 26 20 8 3 0 1 1 1 0 545 549 526 425 c 0 0 0 0 0 0 5 1 2 0 1 2 0 548 0 8 6 0 0 7 28 g 0 0 0 0 0 0 135 7 1 4 3 543 549 0 547 540 542 4 0 6 12 t 0 0 0 0 0 0 295 484 520 525 537 1 0 0 1 0 1 0 0 10 84
DEL1.ampDAP_M0365_AthalianaCistrome_shift6 (DEL1.ampDAP:M0365:AthalianaCistrome)		0.873	0.757	8.111	0.915	0.907	7	3	2	6	8	5.200	6	; dyads_test_vs_ctrl_m1 versus DEL1.ampDAP_M0365_AthalianaCistrome (DEL1.ampDAP:M0365:AthalianaCistrome); m=6/13; ncol2=15; w=13; offset=-2; strand=D; shift=6; score= 5.2; ------tTTTTGGCGGGAAAA ; cor=0.873; Ncor=0.757; logoDP=8.111; NsEucl=0.915; NSW=0.907; rcor=7; rNcor=3; rlogoDP=2; rNsEucl=6; rNSW=8; rank_mean=5.200; match_rank=6 a 0 0 0 0 0 0 136 64 16 9 10 5 2 1 0 0 10 581 584 541 419 c 0 0 0 0 0 0 6 2 0 0 1 4 0 583 0 11 3 0 0 5 33 g 0 0 0 0 0 0 125 12 0 1 3 571 582 0 583 572 569 3 0 9 16 t 0 0 0 0 0 0 317 506 568 574 570 4 0 0 1 1 2 0 0 29 116